DELiVR

DELiVR-algorithms ↴

Source code: Github
Fiji plugin: Github

Prebuilt docker container with binaries and Fiji plugin to run DELiVR ↴

FIJI Plugin: Zenodo
Container: Zenodo

Download a test dataset here: Zenodo
Check out our DELiVR Handbook for detailed documentation for DELiVR: [pdf]
Supporting files for delivr docker building: Zenodo
Training for custom datasets ↴

Code: Github
Docker container: Zenodo

Also includes a collection of pre-trained model weights. If you want to share your own, let us know!

Supplementary Video 1
Annotation of cells in virtual reality using Arivis Vision VR

Supplementary Video 2
Annotation of cells in virtual reality using syGlass

Supplementary Video 3
2D-slice based annotation using ITK-snap.

Supplementary Video 4
Whole brain with c-Fos+ cells detected by DELiVR depicted in the original image space. Cells are color coded by area they belong to in the Allen Brain atlas.

Supplementary Video 5
Example run of the ImageJ plugin on Ubuntu Linux